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rs36861943 SNP Detail
Summary
  • ID
    rs36861943
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr7:79043466 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGAAATTGAG AGCAAGGATG
    GGTATCTTTG TTTCAGATGA GAAATCGTTT ATAAGGGTGT TGGGGATTTG AAGGACAGAA
    AACAATTTAT TGTTCTTAGA AGAGTGATAA AATCAGAAAC AGAATTAGCT CTGTGTACCT
    TTTCACGACC TCCGGCTTGG GTGGTGGTTA CGTGCATAAG AACATCCTTG GTAGAGAAGG
    W
    GTGAAACCCA GCATGAAGCA CCCCAGCTTC AGAGTGGCTT AGAGCTGTGG AGAAGCTCGC
    TGCGTTTGTA GACTTTGGGT CTGGTTGATT CCACTATCTG ATTTTTTTTT TCTAATTCCT
    TATTTAACAT TAAAAAGAAA GAATAGAGTG ATGAAGGAAG TTAAGCGAGG GCTTAGACCC
    TGCAGGACCT GCTCTCTGCG                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss50426443 NES13932584 PERLEGEN MM_PANEL2 f SNP A A A A A A T A A A T A A A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs36861943 SNP A A A A A A T A A A T A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss50426443 NES13932584 PERLEGEN MM_PANEL f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:79043466 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi19293 CpG island 19293 996 bp distal
Fanci Fanconi anemia, complementation group I within coordinates
Rr158102 regulatory region 158102 266 bp distal
Rr168040 regulatory region 168040 66 bp distal
Rr171823 regulatory region 171823 135 bp proximal
Rr400387 regulatory region 400387 1305 bp downstream
Tssr67345 transcription start site region 67345 1372 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory