AGAAATTGAG AGCAAGGATG GGTATCTTTG TTTCAGATGA GAAATCGTTT ATAAGGGTGT TGGGGATTTG AAGGACAGAA AACAATTTAT TGTTCTTAGA AGAGTGATAA AATCAGAAAC AGAATTAGCT CTGTGTACCT TTTCACGACC TCCGGCTTGG GTGGTGGTTA CGTGCATAAG AACATCCTTG GTAGAGAAGG W GTGAAACCCA GCATGAAGCA CCCCAGCTTC AGAGTGGCTT AGAGCTGTGG AGAAGCTCGC TGCGTTTGTA GACTTTGGGT CTGGTTGATT CCACTATCTG ATTTTTTTTT TCTAATTCCT TATTTAACAT TAAAAAGAAA GAATAGAGTG ATGAAGGAAG TTAAGCGAGG GCTTAGACCC TGCAGGACCT GCTCTCTGCG W = A/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss50426443 | NES13932584 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | T | A | A | A | T | A | A | A | A |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs36861943 | SNP | A | A | A | A | A | A | T | A | A | A | T | A | A | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss50426443 | NES13932584 | PERLEGEN | MM_PANEL | f | SNP | A/T |
Location: Chr7:79043466 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi19293 | CpG island 19293 | 996 bp distal | ||||||
Fanci | Fanconi anemia, complementation group I | within coordinates | ||||||
Rr158102 | regulatory region 158102 | 266 bp distal | ||||||
Rr168040 | regulatory region 168040 | 66 bp distal | ||||||
Rr171823 | regulatory region 171823 | 135 bp proximal | ||||||
Rr400387 | regulatory region 400387 | 1305 bp downstream | ||||||
Tssr67345 | transcription start site region 67345 | 1372 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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