rs36861943 SNP Detail

Summary

• ID
  rs36861943
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79043466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAATTGAG AGCAAGGATG
  GGTATCTTTG TTTCAGATGA GAAATCGTTT ATAAGGGTGT TGGGGATTTG AAGGACAGAA
  AACAATTTAT TGTTCTTAGA AGAGTGATAA AATCAGAAAC AGAATTAGCT CTGTGTACCT
  TTTCACGACC TCCGGCTTGG GTGGTGGTTA CGTGCATAAG AACATCCTTG GTAGAGAAGG
  W
  GTGAAACCCA GCATGAAGCA CCCCAGCTTC AGAGTGGCTT AGAGCTGTGG AGAAGCTCGC
  TGCGTTTGTA GACTTTGGGT CTGGTTGATT CCACTATCTG ATTTTTTTTT TCTAATTCCT
  TATTTAACAT TAAAAAGAAA GAATAGAGTG ATGAAGGAAG TTAAGCGAGG GCTTAGACCC
  TGCAGGACCT GCTCTCTGCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50426443	NES13932584	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36861943					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50426443	NES13932584	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79043466 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19293	CpG island 19293	996 bp distal
Fanci	Fanconi anemia, complementation group I	within coordinates
Rr158102	regulatory region 158102	266 bp distal
Rr168040	regulatory region 168040	66 bp distal
Rr171823	regulatory region 171823	135 bp proximal
Rr400387	regulatory region 400387	1305 bp downstream
Tssr67345	transcription start site region 67345	1372 bp downstream