rs36862475 SNP Detail

Summary

• ID
  rs36862475
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:80450799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTTGCCT GCTCTGCATT
  CATTTCTGGG TCCACAGCCG TCTTCCCATC ACTTCCTTGT CCACATCATT CGGGGCAGAG
  TATGAGCATC TTAGCTGGGC AGTGGAGAGA GCCTCGCAGA GTGGAAAACT GACCCAGAGC
  AAGCCCCAGT TCTTGATGCT GTCTGGAGCT TGCAGCTTGC ACCCTGCTCT ACAGAGACCA
  Y
  AAGCCTCTGA CTGTTGCAGT CTGGTTGCCG TTCCCAGTGG TAGGCAGCTG TCTCGTTGGA
  ACTGCCAATC CCAGGGTGTG GCTGCACGTC CTTGGCTGTT TGCTCACTGT CTCCACGGGT
  CTGGAGCATC TGAGTGACCT CACGGACACA GTGTGCATCT AGACTTCTTC CATTACCACA
  GCTTAGCAGA ACAAGCTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50523606	NES13681179	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36862475					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50523606	NES13681179	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:80450799 () rs orientation: forward

Symbol	Name	Function Class
Ctdp1	CTD phosphatase subunit 1	375 bp downstream