rs36864836 SNP Detail

Summary

• ID
  rs36864836
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17814424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTTG GTGTAGACGC GCGTCCGGCA
  Y
  ACCGGGAGCA GACAGCCGGC GAGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ
ss50679590	NES13609750	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C		C	T
ss146130651	ENSMUSSNP5336694	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ
rs36864836					SNP	T	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50679590	NES13609750	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17814424 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10665	CpG island 10665	790 bp distal
Cpgi10666	CpG island 10666	within coordinates
Pcsk5	proprotein convertase subtilisin/kexin type 5	within coordinates
Rr544885	regulatory region 544885	within coordinates
Rr544886	regulatory region 544886	516 bp proximal
Rr544887	regulatory region 544887	562 bp proximal
Tssr158513	transcription start site region 158513	560 bp downstream