rs36865408 SNP Detail

Summary

• ID
  rs36865408
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128045676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TGGAGAGCCT CTAGCTACAT GCATATGTAT CTGCCGCAGA GTAAGAGAAA
  Y
  GGGTGAGAGC CAAACCACGT GGCTTTAGAA GTCTGCGGAG ATCTGTCCAT           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss50948663	NES14143289	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	T		T
ss323532316	CHEV_10_127646863	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36865408					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50948663	NES14143289	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128045676 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	1811 bp proximal
Gls2	glutaminase 2 (liver, mitochondrial)	within coordinates
Rr224447	regulatory region 224447	724 bp proximal
Rr402345	regulatory region 402345	1903 bp upstream
Spryd4	SPRY domain containing 4	101 bp downstream
Tssr99849	transcription start site region 99849	1959 bp downstream
Tssr99850	transcription start site region 99850	1981 bp downstream