rs36866469 SNP Detail

Summary

• ID
  rs36866469
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:16729443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGAAAAT GTGTCCCATG
  TTGGCAGGTC ATAGTAAAAG AGGAGACTTC TATGATTTTA GAGTTATAAA CACAAAATGA
  AACAAAACTA GACCTGACAA ACACACCTGC ACCTTAGCCA AGTGTGAATT CTGACTAAAA
  GTCAAATTAG ATTGGTAGTG AGAGTTGAAA GACCCCAGTG CCCATGTCCT AAATGGATAC
  Y
  TTTTTTTTAA TATTCCTTTA GGAAACAAAA TTATTGTTCT TGTTTTACAA TTTTTTGATC
  AATTCTTTTT AAACAAAGTA TCAATATCCT TCACAATTGA AATGAACTAC TAACATTGTC
  TTTATATGAG ACAAAACGCA GGAGAACATG GAGGGGCTTT TTGAAGTCTT GGCTTTTTTA
  CTAGACTAGT TAGAATTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51245205	NES13797297	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36866469					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51245205	NES13797297	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:16729443 () rs orientation: forward

Symbol	Name	Function Class
Gm67409	predicted gene, 67409	within coordinates
Rr406953	regulatory region 406953	within coordinates
Rr626719	regulatory region 626719	1582 bp distal