rs3686744 SNP Detail

Summary

• ID
  rs3686744
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108888621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGG CTGCCTCCTT GGCCACAAAC
  R
  TACCCCTGCC CCCACCACGG CCCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5062816	WI_WGS_9_110057808	WI	MOUSE	f	SNP	A		G
ss46413398	mCV23599032	ABI	CRAMUS_MOUSE	f	SNP		A	G	A
ss136953551	ENSMUSSNP678853	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss323192976	CHEV_9_108962067	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3686744					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108888621 () rs orientation: forward

Symbol	Name	Function Class
Atrip	ATR interacting protein	194 bp downstream
Gm53191	predicted gene, 53191	within coordinates
Rr401693	regulatory region 401693	66 bp upstream
Rr686956	regulatory region 686956	1688 bp distal
Rr686957	regulatory region 686957	within coordinates
Rr686958	regulatory region 686958	109 bp proximal
Rr686959	regulatory region 686959	255 bp proximal
Shisa5	shisa family member 5	1776 bp downstream
Trex1	three prime repair exonuclease 1	within coordinates
Tssr91571	transcription start site region 91571	1830 bp upstream
Tssr91572	transcription start site region 91572	1282 bp upstream
Tssr91573	transcription start site region 91573	1148 bp upstream
Tssr91574	transcription start site region 91574	915 bp upstream
Tssr91575	transcription start site region 91575	868 bp upstream
Tssr91576	transcription start site region 91576	782 bp upstream
Tssr91577	transcription start site region 91577	294 bp upstream
Tssr91578	transcription start site region 91578	123 bp downstream
Tssr91579	transcription start site region 91579	158 bp downstream