rs3686838 SNP Detail

Summary

• ID
  rs3686838
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106764759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATT AGGACCAGAG TTGGCCCCCT
  K
  GAAAATAGAC ACACAAGGAT GCCTA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5062910	WI_WGS_9_107750209	WI	MOUSE	f	SNP	G			T
ss46399190	mCV22322713	ABI	CRAMUS_MOUSE	f	SNP		G	G	T	T
ss136941066	ENSMUSSNP4300306	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		T
ss323187618	CHEV_9_106789891	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3686838					SNP	G	G	G	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106764759 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22277	CpG island 22277	within coordinates
Manf	mesencephalic astrocyte-derived neurotrophic factor	1193 bp downstream
Rbm15b	RNA binding motif protein 15B	485 bp upstream
Rr401656	regulatory region 401656	82 bp downstream
Rr686406	regulatory region 686406	269 bp distal
Rr686407	regulatory region 686407	within coordinates
Rr686408	regulatory region 686408	455 bp proximal
Tssr86941	transcription start site region 86941	1123 bp downstream
Tssr91351	transcription start site region 91351	466 bp upstream
Tssr91352	transcription start site region 91352	448 bp upstream