rs36868736 SNP Detail

Summary

• ID
  rs36868736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30171579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGAGGCT CCTCCCTGCG
  CTGCCTTGCC CCTCCTAATT CAAATGCGGC AGGAAGAGAA TGCTGCGGTA CCCAGGCAGG
  GCCACACCCA TGGCCACAGC CAGAGTCCAC CCAACACACA GCAGAGCAGG AATACCTAGA
  CCTTAGTTGA AGCAGAACCT GTCCTGGGTC AGAGGAAAAT AGGCTCTCCT GAAACGGGGA
  Y
  AGTGGAGTTC TGCAAAAACA ACCCTGGTAT TCTACAACGG GGAGCCATGA CGGGGCTTTG
  GCAGGACAGT CTCTTATGCT CTCTGTGTAG GTCAAAACCC TGACCTTGAG ATTAAAGGCT
  AAGAAATTCC TCTTCTGACT GTGGGAAAAG GTTGTGTCCC AGCCTGGTAG GTGTGAACAA
  TTAGAGCATC AGAGTTGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51574677	NES14856881	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36868736					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51574677	NES14856881	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30171579 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17248	CpG island 17248	1336 bp proximal
Mir183	microRNA 183	1843 bp upstream
Mirc35	microRNA cluster 35, including Mir182 through Mir183	1843 bp distal
Mirc35hg	microRNA cluster 35, host gene	within coordinates
Mirc40	micro RNA cluster 40, including Mir96 through Mir183	1843 bp distal
Rncr4	retina expressed non-coding RNA 4	1313 bp upstream
Rr146072	regulatory region 146072	1178 bp distal
Rr146073	regulatory region 146073	within coordinates
Rr146074	regulatory region 146074	621 bp proximal
Tssr55327	transcription start site region 55327	1280 bp upstream