rs36869660 SNP Detail

Summary

• ID
  rs36869660
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:116694287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATG AGATGTGAGA AATCACGGTG
  Y
  ATGCTGTGTG AACAATTAAC TGGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51859009	NES14881839	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T		T	T	C		T
ss321918811	CHEV_6_116667344	CHEVERUD	SCREENING_POP	f	SNP									C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36869660					SNP	T	T	T	T	T	T	C	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51859009	NES14881839	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116694287 () rs orientation: forward

Symbol	Name	Function Class
Rr142500	regulatory region 142500	549 bp proximal
Rr145611	regulatory region 145611	286 bp distal
Rr147146	regulatory region 147146	1315 bp proximal
Tmem72	transmembrane protein 72	344 bp upstream
Tssr62610	transcription start site region 62610	664 bp upstream
Tssr62611	transcription start site region 62611	592 bp upstream
Tssr62612	transcription start site region 62612	556 bp upstream
Tssr62613	transcription start site region 62613	403 bp upstream