rs36870532 SNP Detail

Summary

• ID
  rs36870532
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83484848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGACCTT TAAATAGGTA
  AATGTTCACT TGGAGGAATC TCATCAGGAT AACGAGTTGG ATTAAGCATG GTATTGGCTC
  TGTAAGAATG AATCCTGGAG AGGAGACATG TACAGGACTA TATGCAGTGA GTGAGGGGAG
  AGGAGGCATG GAAGAGACTT TCTGAAACAT AAAATCTACA GTCCTGCAGT TGTTGGAAAG
  M
  TGTGACCTGT GGAGCCTAGC ACACACAAAG CTGTGGGCTG GATCTGGAGC AGAGAACTCC
  AGTATGGTGG CACACGCCTG TAATCCTAGA ACTTGAGAGG TGGAGGTAGG AGGCTCAGAA
  GTTCAGTCAT CCTTGGCTAC ACAGTGCATT GGAGGCCATC TTGGGATGTA CGAGACTAGC
  TCAAAAAGGA GGAGGGGGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51354487	NES13746107	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	C	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36870532					SNP	A	A	A	A	A	A	C	A	A	C	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51354487	NES13746107	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83484848 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17605	CpG island 17605	480 bp distal
Dguok	deoxyguanosine kinase	961 bp upstream
Rr399724	regulatory region 399724	688 bp downstream
Rr632885	regulatory region 632885	407 bp distal
Rr632886	regulatory region 632886	1670 bp proximal
Tssr1908	transcription start site region 1908	760 bp downstream
Tssr61663	transcription start site region 61663	1606 bp upstream
Tssr61664	transcription start site region 61664	1043 bp upstream
Tssr61665	transcription start site region 61665	1031 bp upstream
Tssr61666	transcription start site region 61666	1016 bp upstream
Tssr61667	transcription start site region 61667	990 bp upstream
Tssr61668	transcription start site region 61668	972 bp upstream
Tssr61669	transcription start site region 61669	939 bp upstream