rs3687086 SNP Detail

Summary

• ID
  rs3687086
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:13131357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGA CATCAGTGAG CTGAGGGTGG
  Y
  GCTTATCAGA AGAATATGTG CTTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5063159	WI_WGS_1_13146455	WI	MOUSE	f	SNP	C		T
ss45077023	mCV23066012	ABI	CRAMUS_MOUSE	f	SNP		C	T	C
ss148614999	ENSMUSSNP3916305	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss319642041	CHEV_1_13051214	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3687086					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:13131357 () rs orientation: forward

Symbol	Name	Function Class
Gm5250	predicted gene 5250	892 bp upstream
Gm37162	predicted gene, 37162	1182 bp upstream
Rr370874	regulatory region 370874	538 bp downstream
Rr407842	regulatory region 407842	1592 bp distal
Tssr12	transcription start site region 12	1932 bp upstream