rs36871775 SNP Detail

Summary

• ID
  rs36871775
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128178741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTACCAGC TAGAAGCAGC
  TGATCATAAT CATGTTCTGC TTTGAAGTGC GTGCTTTACC CTCCACTAGA ATTGATATTT
  TGTTTTTATC TTTTCATTTT CGTGATTGGA AGGTTTTTTG TGGTTACTGG TATTGTAGGT
  TGGCAGAGTG CTGGCTCCCC ATCAGTGAGG TCCTGGATTC AGTCCCAGCT CTGAAGAAAA
  M
  CAGATGTACT TGAAAACTTG TTTTTGAACC TCGATATTGT TTATCTGGAT ATGTTTAAAT
  ATATGCTATA TAATGTAGTT GGTATGGAAG AATTATTTCA AAGAGAGAGT AAGTCAGTTC
  TATCTTTTTG AACGTGCAAA GAAACCTAAT AACCTATTTC ACTTTCGCCT TATTCTTTTT
  TTTTTTGGGG GGTGCAGCGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51863561	NES14892159	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36871775					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51863561	NES14892159	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128178741 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18048	CpG island 18048	659 bp distal
Gm4691	predicted gene 4691	372 bp downstream
Gm10010	predicted gene 10010	1088 bp upstream
Gm66766	predicted gene, 66766	within coordinates
Gm68827	predicted gene, 68827	401 bp downstream
Rr399953	regulatory region 399953	970 bp downstream
Rr639207	regulatory region 639207	1464 bp distal
Rr639208	regulatory region 639208	1207 bp distal
Rr639209	regulatory region 639209	1060 bp distal
Rr639210	regulatory region 639210	17 bp distal
Rr639211	regulatory region 639211	261 bp distal
Tssr63410	transcription start site region 63410	1208 bp upstream
Tssr63411	transcription start site region 63411	1203 bp upstream
Tssr63412	transcription start site region 63412	1186 bp upstream
Tssr63413	transcription start site region 63413	1143 bp upstream
Tssr63414	transcription start site region 63414	1128 bp upstream