rs36871854 SNP Detail

Summary

• ID
  rs36871854
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:97873583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACAGTCC TGGGACCATA
  TTTGGGCATG CCTTATAGAA CCAAGGACTA GTAAATACAA CCGGAAGAAC AAAACAAAGA
  ACAAAACACA AGTCACCATA TCCTTTCCAA TGATTTTTTT TTTTTTGGTT TTTAATATCA
  ATTGATGTTT TAAAAAATAC AGAGGTGTTT GACACAGAAT AGCACCATTG TGTAGGACAC
  R
  CAGTCCCTGC GCCCAGCATC TGTAGGGGTC TTCTGGCTGG GCTGGGAACA GTCACTCGGG
  GGGCGTCTGA CTCACACCAG ATAGTTCCTG TCTCCGCCTG GACCCAGAGG TCTTACAGGA
  AGACAATAAA TAAATAGAAC ACCGAGATTT TATTTTGCAG TCTGCCCAGT TCAGGTCTCT
  TAGAAAGGGG AGCACAGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51763560	NES14551331	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36871854					SNP	G	G	G	G	G	A	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51763560	NES14551331	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97873583 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col2a1	collagen, type II, alpha 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr508999	regulatory region 508999			1909 bp distal
Rr509000	regulatory region 509000			1109 bp proximal
Tssr4707	transcription start site region 4707			1186 bp downstream
Tssr132910	transcription start site region 132910			72 bp downstream
Tssr136189	transcription start site region 136189			15 bp upstream
Tssr136190	transcription start site region 136190			within coordinates
Tssr136191	transcription start site region 136191			210 bp downstream
Tssr136192	transcription start site region 136192			316 bp downstream
Tssr136193	transcription start site region 136193			358 bp downstream
Tssr136194	transcription start site region 136194			406 bp downstream
Tssr136195	transcription start site region 136195			422 bp downstream
Tssr136196	transcription start site region 136196			441 bp downstream
Tssr136197	transcription start site region 136197			454 bp downstream
Tssr136198	transcription start site region 136198			976 bp downstream
Tssr136199	transcription start site region 136199			1022 bp downstream
Tssr136200	transcription start site region 136200			1040 bp downstream
Tssr136201	transcription start site region 136201			1096 bp downstream
Tssr136202	transcription start site region 136202			1150 bp downstream
Tssr136203	transcription start site region 136203			1575 bp downstream
Tssr136204	transcription start site region 136204			1668 bp downstream