rs36871954 SNP Detail

Summary

• ID
  rs36871954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72653166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGGTGCA TGAATTTAAT
  CCTAGCACTC AGCAGGCAAA TCTCTCTAAG TTCAAGGCCA TCTAGGTCCA AGACATCTGG
  GGCTACACAA AGAAACTCTG CTCAAAATGG AGGGAGGGAG GGAGGGAGGA GAGAGAAAGA
  GAGAGAGAGA GAATGAGAAT GAGAATATTA GTAGCTGAAT TGAGGAAGAA ACTCACATTG
  Y
  TGGGCAAGGC AGCCAAGAAG AAAAAGAATG GAAGGAAGCT CTGAGGACTG TAGTTAGGTC
  AACAACTTGT GTGAGCAGCC TTTAACCCTG CACCGGTGTG CATAGCTCTT TAAGTGTGGT
  GCATAGCCTC ACATGAAGCC TAAGAGTTTG ACGTCATACT AAGCTAATAT TTTATTAGTG
  GAATTTCAGG TAAGTTGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51271136	NES14523196	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36871954					SNP	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51271136	NES14523196	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72653166 () rs orientation: forward

Symbol	Name	Function Class
Gm70886	predicted gene, 70886	157 bp downstream
Smarcal1	SNF2 related chromatin remodeling ATPase like 1	within coordinates