rs36872158 SNP Detail

Summary

• ID
  rs36872158
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11504847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAGTGGG GCGGGGGTGT
  CAGATGTCTG CTCCCTCAAG TGCTCACAGT AGCCAGCACT GGGCTGTGTG GATACAACCT
  CACTGTTGCT TCCATCATCC GCAAAGAGAT GGGATTGTTA AAAGAGAAAA GAAATACAGC
  GAGGTGGAGA AGAGTAGAAC TGGCAGTGAT GTGAGGGACT GCCATCTTGT TGGAAGAAAG
  Y
  AATGCAATTT GACTAACAGG AATAACATGC CTTCAATTAC AACATCTAAG AACATACACG
  TGGTCCGCAT CACATGGAGC GAACATTGGG TAAGATAACA ATGAAGATCC TGCATTATAT
  TAATTCTCTT ATGACAATAA AAGTAAAATA AGAAAAACCA CAGCTCCAAA ATGGTGAGAT
  AGTTGGGTCT GGTCAACCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss50619034	NES13635213	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs36872158					SNP	C	C	C	C	C	C	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50619034	NES13635213	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11504847 () rs orientation: forward

Symbol	Name	Function Class
Ms4a6b	membrane-spanning 4-domains, subfamily A, member 6B	within coordinates
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Tssr155256	transcription start site region 155256	1110 bp upstream