rs36872282 SNP Detail

Summary

• ID
  rs36872282
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130369274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCCTGCTC CGACGTGCTC
  CGTGGATGTG AATCACGTGC TGGGAACGAA AGACCCCTTC GTTCCTTGTG GTCTTTCCAG
  ATGCTGAGGC GTCACTTAGG GCCAGAATCA GAGGGGGGAG GTAGATGAGG ATGGTGGAGA
  GGGAGACAGG AGGAGAGAGA AGGGGTCGCA ACTCGAAAGT TTAGCCTGGG CTGCCAGAAC
  R
  TTTTCAGAAG CCCAAACTTG AGGGTAGATC ATTTACTCAG TGAGAAAATG ACCGCTCCAG
  TTGCCTTCTG TGTCTCAGCA ACCTGAAACA ATTCATAAAA GCCTTCCCAA AATCCCACGG
  GGTTCTGAAG TGGAGTTTAT TTTAACTTGC TTTTCCTTTA CATTTATGTC CATCTTCGAA
  ATGTAATCTC TTCCGTAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51627695	NES14660048	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A		A	A	G	A
ss135896427	ENSMUSSNP4662997	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36872282					SNP	A	A	A	A	A	A	G	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51627695	NES14660048	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130369274 () rs orientation: forward

Symbol	Name	Function Class
Col25a1	collagen, type XXV, alpha 1	Intron
Cpgi13824	CpG island 13824	146 bp distal
Rr585176	regulatory region 585176	662 bp distal
Rr585177	regulatory region 585177	1169 bp proximal
Rr585178	regulatory region 585178	1258 bp proximal