rs36872330 SNP Detail

Summary

• ID
  rs36872330
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:26298162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAGACCT GATGGACGGT
  CTTGCAGGTT TTGTTTGTTT GTTTGTCTGT TTGTTTGTTC TTTTGAGACA GGGTCATTCT
  GTGTAGCCCT TGTTGTCCTA AACCTTACTA TATAGACCAG GCTGGGCTTG AACTCACCAG
  AGATCTACTT GCCTCTGCCA GGGAGAGTAT GTGCCACCAT GCCTACCTCT GGTCTTGTTG
  Y
  AAGAACTCAC TCTTTGACTC TTTTACCCTG GCTCCCTCTC TTGGCCAGAG CTTCTATATA
  CTTTTTGATG CACCTCAGTT ACTGGGCATT TAAGCGGAGG ACAGGGCTTG AAGTCTACAT
  TTACAACTTT AGAGAAGCTA TATATACATA TCCTCTGCCC CATCTCCGTG ACCCCTGCTT
  TCCCCTACCT GCAGAGTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50513603	NES14089157	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36872330					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50513603	NES14089157	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:26298162 () rs orientation: forward

Symbol	Name	Function Class
Rr189143	regulatory region 189143	within coordinates
Rr366752	regulatory region 366752	within coordinates
Star	steroidogenic acute regulatory protein	340 bp upstream
Tssr76716	transcription start site region 76716	360 bp upstream
Tssr76717	transcription start site region 76717	518 bp upstream
Tssr76718	transcription start site region 76718	1728 bp upstream
Tssr80732	transcription start site region 80732	114 bp downstream