rs36872346 SNP Detail

Summary

• ID
  rs36872346
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:24525012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGGAAAAT AGAATGGTTC
  ATTAAAAAAA TATACATCTG AGACAGAGTT TGGGGGATAG CGAGTGGAAA ACTTGAAGAT
  GTTGGAAAAA ATAATTTATA TATGAAGTAA TAAAGAAATA GATGGCAAAA AAACCATCAA
  GAACATGAAG TAAATAGTGC ATAGCTCTAC AGCTGTGCTG TGCAGTAGGT AAACACGGTT
  R
  AAGAATACTT GAAATGAGAT TATTCAGGCT AAAATATGAT GTAAGTAAAA TATACTGAAA
  AAAGGCTGCA GACTAGCATT AGTTTTCATC CTGATTATAT CATGAAGTGA TAGTTACGCT
  TAATGTTAGG TTACATCATA AAGAAGAACT TTCTAGAAAA CTCTTAGCTT ACACACGTGG
  TGCTCAGATC TCCTTGGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51254335	NES13801076	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36872346					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51254335	NES13801076	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:24525012 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17202	CpG island 17202	1901 bp proximal
Ndufa5	NADH:ubiquinone oxidoreductase subunit A5	within coordinates
Rr627233	regulatory region 627233	1734 bp proximal