rs36873178 SNP Detail

Summary

• ID
  rs36873178
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:68735051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCTTTGC AGTGAACATC
  TTAAAATATG GGAATCAAGA TTATTGGTTT TGGGTGGAAA CCAAGTGGTT TGGAACTACA
  GGATTGGTTG TTACAAGGGC AAAAGTGGGA GGGGTGGATT TGGCTGAAAC TTTGAGCATA
  GAAAGAACGT AATGATTGTG AAATGAGGAG CCTTTCCCTG CTTAGGGGAC TATTTATACA
  R
  TCCCCTACAG CTTAGGCCCA GAGGCACTTG TAGGACATTA GGGTGATGAT GTCCCTTCCA
  TCGCTACAGG GAAGAAGAAT GTGGAATGTT GCTTCCGCAA TCCTCAAGCC GGCCCCCAGT
  TATGTGGGTG GGGTAGAGGC TGGAGGCTTT GGCAAACAGC ACCACCTTGA TTTGCTCTTG
  TTCTATGGAT ACCCTGGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50732730	NES14244257	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36873178					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50732730	NES14244257	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:68735051 () rs orientation: forward

Symbol	Name	Function Class
D9Dcr8	DNA segment, Chr 9, Derry C. Roopenian 8	1147 bp proximal
D9Mit260	DNA segment, Chr 9, Massachusetts Institute of Technology 260	1155 bp proximal
Rora	RAR-related orphan receptor alpha	within coordinates
Rr210394	regulatory region 210394	within coordinates
Rr383535	regulatory region 383535	within coordinates