rs36873525 SNP Detail

Summary

• ID
  rs36873525
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5121333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCGCCTT CATAGAAGAT
  AATAGGGGGA AGAGGTAAGA ATAGGTTGAG GAAAGCCCAG TTCTAGCTTC CTGGGTCCAC
  TTAGAAACAA GGCCTTCCCA CTAGGGAACA CATTCTACTC TTTACCCTGT TGGGGTGAAA
  GTGGCACCGC TAGAAAAAAA TCCCGGCAGA CCCTAGCAGC ACGAGGCTAT TCAGGTTTGG
  K
  GTCCTGGTCA GAGATCACGA GTGTGAGATA ACCTCCCCCC CTTATCCTCG CTGACTGTCT
  TGGGGGGAAG GGACGGGACC TGGAAGAGGG AGACGCCGGT TCCACCACCT CTATAATTTT
  TCAGCTTAGC CCTCGTGGGG CTTCTAATTA GGACTGGGCA AAGCCGCACA CCCCACACCC
  CCCGCCCCCA GGCAGGTGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50580614	NES13651955	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36873525					SNP	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50580614	NES13651955	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5121333 () rs orientation: forward

Symbol	Name	Function Class
Cd248	CD248 antigen, endosialin	665 bp downstream
Cpgi10429	CpG island 10429	222 bp proximal
Cpgi10430	CpG island 10430	613 bp proximal
Gm46658	predicted gene, 46658	921 bp upstream
Rr405800	regulatory region 405800	692 bp upstream
Rr405801	regulatory region 405801	1931 bp upstream
Rr542921	regulatory region 542921	431 bp proximal
Rr542922	regulatory region 542922	935 bp proximal
Tmem151a	transmembrane protein 151A	within coordinates
Tssr154385	transcription start site region 154385	1859 bp downstream
Tssr154386	transcription start site region 154386	1600 bp downstream
Tssr154387	transcription start site region 154387	1552 bp downstream
Tssr154388	transcription start site region 154388	1470 bp downstream
Tssr157540	transcription start site region 157540	769 bp downstream
Tssr157541	transcription start site region 157541	804 bp downstream
Tssr157542	transcription start site region 157542	1192 bp downstream