rs36873673 SNP Detail

Summary

• ID
  rs36873673
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11261651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAGAAGG CTGTTTTTAT
  CTGGTGTCAG GAGTACATGG TTGTAACCCC AGCACTCAGG GGGCTGAGCC ATGAGGATTG
  CTAAAGGCTT GAGGTCAGCC TGGGACAGAC AGCAAGACCT AGTCTCAAAA AAAAAAAAAA
  AAAAAAAAAA AACAGGGAAA ACCTGGTCTC AAAATTCACT GCATTTTTAA CTTAAAGATA
  R
  CATTATCTCT TGCTGAGGCC ATGTCAGCAT CTGAATATGG AAGCTTGGAG CTCAGGCAGC
  CTTTGGGACA GTATCCCCTC AACAACAAGG CTGTCAGGCC TCATGGTCTT ACCTTGAAAT
  CCTGGAACTC CGGGCAGTCC CATATCTCCC TTTGAACCTG TGATCCCTGG AGAGCCGCCA
  ATGCCCTAGG TACCAAAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51941296	NES14959976	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	A	A	A	A	A	A	G	A
ss148666888	ENSMUSSNP626692	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36873673					SNP	G	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51941296	NES14959976	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11261651 () rs orientation: forward

Symbol	Name	Function Class
Col4a1	collagen, type IV, alpha 1	within coordinates
Tssr80369	transcription start site region 80369	74 bp upstream