rs36874446 SNP Detail

Summary

• ID
  rs36874446
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131454741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTGGAGG GCTGGACGGA
  GAAAGCACCC TGCAAGCCGT GAGGAACACC CCATCTTTCC GGGTCCTGGG CTGGCAGCCA
  AGGCTAGGAG ACCAGGGACG AGACCAGCGG ACCGTTACGG CGAGGCCCCT AGGTGGACCC
  GGCCAACCGT GTGCAAAGGG GCTGCGGGAG GGCGGTGTCG CCGCGTGAGG ACCGTCCTCG
  K
  CAGTGCAGGG ATGGGCGGAG AGATGAACAG TCCCGAGAAG TATTATGGGC TGCACTGGGG
  GATTTGGAGG GCCGGGGAGG GCGGTATGAG GACCGCGGGC GGCGACACGG CTAAGGCGGC
  GCCGAAAGCA GCAGCATCCG CAACGCGTCC ACCCGCCCAG TCCCGGTTTG TTCAGTCAGA
  GCAGCAGCAG CCGGGCGTAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51368054	NES14475968	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36874446					SNP	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51368054	NES14475968	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131454741 () rs orientation: forward

Symbol	Name	Function Class
Cpgi711	CpG island 711	within coordinates
Fam72a	family with sequence similarity 72, member A	900 bp upstream
Gm70877	predicted gene, 70877	within coordinates
Rr396286	regulatory region 396286	279 bp upstream
Rr396287	regulatory region 396287	590 bp upstream
Srgap2	SLIT-ROBO Rho GTPase activating protein 2	within coordinates
Tssr8627	transcription start site region 8627	1724 bp downstream
Tssr8628	transcription start site region 8628	1550 bp downstream
Tssr8629	transcription start site region 8629	855 bp upstream
Tssr8630	transcription start site region 8630	898 bp upstream
Tssr8631	transcription start site region 8631	977 bp upstream
Tssr8632	transcription start site region 8632	1358 bp upstream
Tssr13589	transcription start site region 13589	1841 bp upstream
Tssr13590	transcription start site region 13590	1771 bp upstream
Tssr13591	transcription start site region 13591	1744 bp upstream
Tssr13592	transcription start site region 13592	1652 bp upstream
Tssr13593	transcription start site region 13593	1575 bp upstream
Tssr13594	transcription start site region 13594	1465 bp upstream
Tssr13595	transcription start site region 13595	1418 bp upstream
Tssr13596	transcription start site region 13596	1385 bp upstream
Tssr13597	transcription start site region 13597	1156 bp upstream
Tssr13598	transcription start site region 13598	455 bp upstream
Tssr13599	transcription start site region 13599	413 bp upstream
Tssr13600	transcription start site region 13600	258 bp upstream
Tssr13601	transcription start site region 13601	263 bp downstream
Tssr13602	transcription start site region 13602	299 bp downstream
Tssr13603	transcription start site region 13603	520 bp downstream