rs36874623 SNP Detail

Summary

• ID
  rs36874623
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97872476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGAGTGT ATCTCCCTTC
  TCAGTTCGCA CATCCCCACC ACTGTATGCC TCTAGTGGAG AAGGGAACGA CACGCCCATT
  TCACACCCAA GGCATTGGGG AAAAAAGGGT ACTCGGCCAT AGGGATAGGG AAGACTTTCC
  ATTCCTCATC TGGATGGAAT ACAGAGAAGG CCCTACAGAG ACCTTCCAGA GAAGGTTGAG
  W
  GAAGCTTTGA ACTCATGTCT AGGGAATGAA GAATGGAGAT GGGGCAAAGG AAGCAGAGGC
  GTGGCAAGGG AGGTAGGGGC GGGGTAAGGG AGGCAGGGGG CAGAGCCTTA CTTTCCTGTC
  TCCTTGCCTC AGAAGCTTGC AGAAAGATGC AGAGAATCAT CTAGGTTGCT TGTATCAATG
  ACCCCTGGGG ACTTAGTCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51763590	NES14551311	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36874623					SNP	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51763590	NES14551311	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97872476 () rs orientation: forward

Symbol	Name	Function Class
Col2a1	collagen, type II, alpha 1	1007 bp downstream
Rr508999	regulatory region 508999	802 bp distal
Tssr132910	transcription start site region 132910	1008 bp upstream
Tssr136189	transcription start site region 136189	1073 bp downstream
Tssr136190	transcription start site region 136190	1104 bp downstream
Tssr136191	transcription start site region 136191	1317 bp downstream
Tssr136192	transcription start site region 136192	1423 bp downstream
Tssr136193	transcription start site region 136193	1465 bp downstream
Tssr136194	transcription start site region 136194	1513 bp downstream
Tssr136195	transcription start site region 136195	1529 bp downstream
Tssr136196	transcription start site region 136196	1548 bp downstream
Tssr136197	transcription start site region 136197	1561 bp downstream