rs36875499 SNP Detail

Summary

• ID
  rs36875499
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:42772505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCATGCC TTCTGCCCAT
  GCATACCCTA GACAGCCCCT GGCTCGGTGA AGAGCTGGGT CCTTCTGTCA TGTCTTCCCA
  ACTGTCTGTC AGTCTTCGTG CTCAACATCT GGGCATTCGA CCTATTTCCT CTTTTGTGTT
  GGGGGTAGGG CAGGGGTGGG GGTAAATAAG GCAATGCATC TTTATCCTAA AGTCCTCAGC
  R
  CCTAGCTTGG TACCTGAGCC CTTAGTAAGA GCTCATTCAA CAAAACGGGT GTGGGAGCAA
  GAAAGGGTTG GAAGAGATGG AGATGTCCTG ACCTACAGGA AACCAAGCAA GCCTTTGCCC
  TAAAGCCCAG CTACCTGCTC GGTTACTGTC TGGCAAAGAC CTTGTCCTTC CTCAAATGTT
  TACAGTACTA TGTAAATAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52008981	NES15031331	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36875499					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52008981	NES15031331	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42772505 () rs orientation: forward

Symbol	Name	Function Class
Gm55338	predicted gene, 55338	842 bp downstream
Gm67530	predicted gene, 67530	within coordinates
Grik4	glutamate receptor, ionotropic, kainate 4	within coordinates
Rr383275	regulatory region 383275	1768 bp downstream
Rr677285	regulatory region 677285	635 bp distal
Rr677286	regulatory region 677286	97 bp proximal