rs36875649 SNP Detail

Summary

• ID
  rs36875649
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:37419712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAATCTGAA TTATCACAGT TCTAGCACAC ATTCATTGCT
  AGCTTTTTAT GTAGTTTTAT GGCCTTTATT AAACAGACAT TAGCCAATCT TGCCACACGT
  Y
  TCCAAGTCCT AAATCAGAGG GCTAATTTTT TTTTTTAAAT TCATAGGATT TTGTTGTTTT
  GTTTTTGAGA CAAGGTTACC TGTAGCCCAG GCTGTCCTCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51603162	NES14852141	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36875649					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51603162	NES14852141	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:37419712 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17302	CpG island 17302	302 bp distal
Creb3l2	cAMP responsive element binding protein 3-like 2	629 bp upstream
Gm33318	predicted gene, 33318	within coordinates
Gm67278	predicted gene, 67278	within coordinates
Rr399613	regulatory region 399613	356 bp downstream
Rr628663	regulatory region 628663	642 bp distal
Rr628664	regulatory region 628664	223 bp distal
Rr628665	regulatory region 628665	407 bp distal
Rr628666	regulatory region 628666	within coordinates
Rr628667	regulatory region 628667	1384 bp proximal
Tssr55612	transcription start site region 55612	253 bp downstream
Tssr55613	transcription start site region 55613	210 bp downstream
Tssr60356	transcription start site region 60356	849 bp upstream
Tssr60357	transcription start site region 60357	623 bp upstream
Tssr60358	transcription start site region 60358	605 bp upstream