rs36877244 SNP Detail

Summary

• ID
  rs36877244
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145347051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTTACTT ACCAGCAGCT
  GACCGAGACA GATGCAGATA CGTATACCCA ACCATTGGTC TGAAGTCGGC CACCCCTATG
  GTTGTTAGGA TGGCTTTATT TGCAAGCAAC AGATGACTCA CCAAAATAGT TTAAATAAGG
  GGTTTATTGT CACACTCAAC CAGAGCATCA TTGGGACAGG GACTGGGTGA CTCAGCAGTT
  Y
  GAGCCCATTC AATGCAGAGG GGCTCCTTAT TGCTGCTCTG ACATTCTCCT GAAGCTCAAG
  GAGGGATGAT GTCCAGCAGG CAAGAAGGGC ACTTCCTCTC CTCCGCTTGC TTCTTATTAT
  CAAGGATAGA TATTCTCTGG AGCATCCCTC CCCTCTTTCA GTAGCCTTGA TGAGATTAAG
  TCATGGTGAC CTAAGGCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51671225	NES14639404	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36877244					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51671225	NES14639404	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145347051 () rs orientation: forward

Symbol	Name	Function Class
Rr586807	regulatory region 586807	507 bp distal
Rr586808	regulatory region 586808	1643 bp proximal