rs36877288 SNP Detail

Summary

• ID
  rs36877288
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46655675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGC ATCACCGAAG CCAGGACCTG
  R
  GCTCTACAGC AGGTCAGGCT GGAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51103917	NES14353421	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	G	G	G	G	A		G	A	A		A
ss148973615	ENSMUSSNP2690319	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss324333694	CHEV_13_46597568	CHEVERUD	SCREENING_POP	f	SNP										G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36877288					SNP	A	G	A	G	G	G	G	G	A	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51103917	NES14353421	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46655675 () rs orientation: forward

Symbol	Name	Function Class
Cap2	cyclase associated actin cytoskeleton regulatory protein 2	within coordinates
Cpgi5539	CpG island 5539	within coordinates
Gm35110	predicted gene, 35110	274 bp upstream
Gm61509	predicted gene, 61509	696 bp upstream
Rr478915	regulatory region 478915	341 bp distal
Rr478916	regulatory region 478916	240 bp distal
Rr478917	regulatory region 478917	23 bp distal
Rr478918	regulatory region 478918	206 bp proximal
Rr478919	regulatory region 478919	717 bp proximal
Tssr119597	transcription start site region 119597	314 bp downstream
Tssr119598	transcription start site region 119598	283 bp downstream
Tssr119599	transcription start site region 119599	151 bp downstream
Tssr119600	transcription start site region 119600	92 bp downstream
Tssr119601	transcription start site region 119601	59 bp downstream
Tssr119602	transcription start site region 119602	12 bp downstream
Tssr119603	transcription start site region 119603	690 bp upstream
Tssr122343	transcription start site region 122343	588 bp downstream