rs36878209 SNP Detail

Summary

• ID
  rs36878209
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:31469123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTAGAAA TCTCCATGAT
  TTCCTCAAGA AAATATAGAC AAGTGTGGGC ACTAATGGAG ACCCCAGTAA GGAAGTAAAA
  TGAATGCTGT TATTTAATCA GCTATGGTTG TTGCTTGTCC TGTGTTATTA CTATGGCCTG
  AGATAACTTA TGTTGCAATA ACACATTTTT GGCCTAAAGA AAATATTTCA AAGACTTGTG
  Y
  TGAAGCTTAG GCATTTGTGG CTTTCCGGAG CTGTCACCGG ATCCAGACTG TTTTCTATTC
  CTACTACCAC TGAGACAAAC CACGGTAGTG GCACACTGCC TCCATCCCTC TCCCTCAGCT
  AGCCGGTGAC CACCCCACCC CCATCTCATG CAGACATTTT AGACTCTGTA CATCAAACCC
  TACAAGTACT AGTCCCTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51630439	NES14594847	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	T	C	C	T	C	C	C	C
ss147445931	ENSMUSSNP6853386	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36878209					SNP	T	T	C	C	C	T	C	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51630439	NES14594847	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:31469123 () rs orientation: forward

Symbol	Name	Function Class
Marchf6	membrane associated ring-CH-type finger 6	within coordinates
Tssr133930	transcription start site region 133930	1056 bp upstream
Tssr133931	transcription start site region 133931	1025 bp upstream
Tssr133932	transcription start site region 133932	997 bp upstream