rs36878573 SNP Detail

Summary

• ID
  rs36878573
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90879916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAACTACC TGTGGTCTGT
  GGTCTAGGAC CACACACCAT TCTGGGGTCT CTGACACTCA AGGGCTGTCC ATGATGGAGG
  GCAGGTGAAG GTGGCCCTCA GTGGGACACC TCAAGCAAAG CCCAGAAGGC ACCCTCCAGA
  AAGGCTCAGA ACTCAGGATC AGTTAGCATT CTCAGTCCCC ATCACCCAGC CTGAGTGGGT
  R
  CAGTCTTTAC AATGATTCAT GGTGGCTCCT CCATTCCTCT AGTTAGGGTT CCCCTTCACT
  GTGTGGGACA TCCCAGGAGG AGGAGGAGGA GAGGGTGGGC ATTTAAAGAG CTCTGATGGA
  CAGCGCTGTG TGGACAAGGA GAAGCTGGAG CGTCAAAGTC AGCTGGGGGG GGGTCTTCCT
  TGAGCATCTT CTAATAGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss51301208	NES14511604	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs36878573					SNP	G	G	G	G	G	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51301208	NES14511604	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90879916 () rs orientation: forward

Symbol	Name	Function Class
Mlph	melanophilin	1052 bp downstream
Prlh	prolactin releasing hormone	914 bp upstream
Rr415503	regulatory region 415503	196 bp distal