rs36878798 SNP Detail

Summary

• ID
  rs36878798
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:68940620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAATAGCA GATTAAACAG
  AAATCTCCAG TCTTTGGTGC TATACTCTTT TTAGGAGACC TAGAAAGTGC CAGATTCCAC
  TTTTCAGTTG AATAGACCTT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGCACGCGC GCACACGTGT GCAGTTACTA ATATCATTGT AATATAGTGT GCCAAGCTCT
  R
  TCCCAAAACT GAATGGACTT TAGTTCTACC ATGAATTAAA CCAGTAATGA GTACTTTCAT
  CTCTGATTCA GACATTATCT ACTAGATTTG ATAGCTACTG ACCACTCAAG ACTCCTTTGC
  TTAGGATGAA ATACTTACAC TCTCTGGACC TCAGGATTCT CTTTGATCCA TTGTTCATCA
  CAATAGCTCC ATATAGTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50730532	NES14249536	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36878798					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50730532	NES14249536	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:68940620 () rs orientation: forward

Symbol	Name	Function Class
Rora	RAR-related orphan receptor alpha	within coordinates
Rr682107	regulatory region 682107	786 bp proximal
Tssr90367	transcription start site region 90367	949 bp downstream
Tssr90368	transcription start site region 90368	1002 bp downstream
Tssr90369	transcription start site region 90369	1116 bp downstream