rs3687911 SNP Detail

Summary

• ID
  rs3687911
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:36392639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAG GGGGAAAAAA GCAGGTCCAT
  K
  AGGCTTCTGA CCATTTCAGG CTGGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss5063994	WI_WGS_7_27208277	WI	MOUSE	f	SNP	G					T
ss48182507	NES11812119	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	T		T		G	T		G	G	G	G
ss148848807	ENSMUSSNP4991873	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G					T
ss322166694	CHEV_7_37478233	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs3687911					SNP	G	T	G	G	T	T	T	T	G	T	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48182507	NES11812119	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:36392639 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18883	CpG island 18883	1084 bp proximal
Cpgi18884	CpG island 18884	1963 bp proximal
Gm36722	predicted gene, 36722	within coordinates
Rr645552	regulatory region 645552	362 bp distal
Rr645553	regulatory region 645553	within coordinates
Rr645554	regulatory region 645554	976 bp proximal