rs3687923 SNP Detail

Summary

• ID
  rs3687923
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:115191375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAATAGCCAG TGCTCTTAAC CACTGAGCCA ACTCGTCAGG
  CCCCTCCCCC ATCAATTCTT AAAGGAAGAA ACCAAACCAA CCGACCAACC AACCAACCAA
  M
  CAAACAAAAA CATACTGTGG TCCTAGGAAC TCTTTAGCAC CTGAAAACCC CTCGGTGGTC
  ACATGAACCC AGTAGCTCCT CACTGCACTA CCAACCATG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5064006	WI_WGS_5_113018786	WI	MOUSE	f	SNP			C	A
ss149120723	ENSMUSSNP4956295	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A			C
ss321654185	CHEV_5_115503325	CHEVERUD	SCREENING_POP	f	SNP						C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3687923					SNP	C	A	C	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115191375 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm13827	predicted gene 13827			153 bp downstream
Rr378497	regulatory region 378497			1825 bp downstream
Rr618105	regulatory region 618105			327 bp distal
Rr618106	regulatory region 618106			537 bp proximal
Sppl3	signal peptide peptidase 3			Intron
				Noncoding-Transcript-Variant
Tssr48203	transcription start site region 48203			145 bp upstream