rs36880097 SNP Detail

Summary

• ID
  rs36880097
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:36222017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGTGCAA TACCTGCCCA
  GCTGTTTGTA GGCCTTTCAG AAAATAGAGA TGTCGTATAA TAAGCTCTGA TTTTAAAGGC
  ACAATATATA TTTACTAAAT ATATGTATAT ATAATTTACT TATGTGTATA TAATAACTGT
  GGGGCACAAA ACCATTTCTA GGTAGTACAT ATCATAATGA ACCCATAAAT AATAAAAACA
  Y
  CAGGGTTGAT AGCTCAGCAG TCAAGAATGT CTACTAGGAA GCCGGGCGTG GTGGCACACG
  CCTTTAATCC CAGCACTCGG GAGGCAGAGG CAGGCGGATT TCTGAGTTCG AGGCCAGCCT
  GGTCTACAGA GTGCCAGGAC AGCCAGGGCT ACACAGAGAA ACCCTGTCTC AAAAAACAAT
  AACAAAAAAA CAAAAAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ
ss50978985	NES14410880	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ
rs36880097					SNP	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50978985	NES14410880	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:36222017 () rs orientation: forward

Symbol	Name	Function Class
Ankmy2	ankyrin repeat and MYND domain containing 2	within coordinates
Gm19046	predicted gene, 19046	350 bp upstream