rs3688020 SNP Detail

Summary

• ID
  rs3688020
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:162160523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATAATTTAT CAATAAAATA TGAAGCATAT AATACATGAC
  TATGCATATA CATACATGTA TAATTGGCTT TGGTCAAAGA TATTTGTATA GCTCAATGGA
  S
  AGGAGATAAT CTGTTTAATA TACAAATGAA CCCAGAACTG AGTCTCTGAT CTTTCACTGT
  ATACACACAC ACACACACAC AATGATCACA GACCTAAAT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	PWD/PhJ	WSB/EiJ
ss5064104	WI_WGS_1_163518082	WI	MOUSE	f	SNP	C	G
ss51399152	NES14460703	PERLEGEN	MM_PANEL2	f	SNP	C		G	C	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	PWD/PhJ	WSB/EiJ
rs3688020					SNP	C	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51399152	NES14460703	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162160523 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnm3	dynamin 3			Intron
				Noncoding-Transcript-Variant
Rr421955	regulatory region 421955			1821 bp proximal