rs36880408 SNP Detail

Summary

• ID
  rs36880408
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128002650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGACAGTC CCATGCCAGG
  CAGTGTGGTA CATTCCTACA ACCCCAGGAT CAGGAGATAA GGATAGCCTG AGCTACAGAG
  AGACCCCTCT CAAAACATCA CACACAACAG CTGGGAGATA GCTGTAAAGA AATTTGCCAA
  GCACTCGGGA ATGCCACAAA TCCCAAGTGA ACTTGTGAGC TACCTGTGTG TGACTCCAGG
  Y
  CCCAAAGGTG GCTGTGGGAC ATGGAACCCC TGGAACAAGC TGGCAAGCCA GAGTCTGCAA
  TGCTGAGCTC TGCTTCAACC GGCAGACCTT GCCTCAATGA GTAAGGTAAA GATTGCTGCC
  CTCAGTCTTT TTTTTTTTTT TTTTTTAAAG ATTTATTTAT TTATTATATG TAAGTACACT
  TAGCTGTCTT CAGACACTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50948833	NES14144020	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C		T	C	C	T		C
ss323532021	CHEV_10_127603837	CHEVERUD	SCREENING_POP	f	SNP									C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36880408					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50948833	NES14144020	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128002650 () rs orientation: forward

Symbol	Name	Function Class
Rbms2	RNA binding motif, single stranded interacting protein 2	within coordinates
Rr213658	regulatory region 213658	151 bp proximal
Rr226545	regulatory region 226545	within coordinates