rs36880732 SNP Detail

Summary

• ID
  rs36880732
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:7194701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATGACGT CGCTGCCAGT
  TACCAGGCAT GCCCTCCCCT GCGGTGGGGG GGGGGGGGGA ATGGAAGGAG AGACGGGTTT
  AGAGAGGCCG AACAGAGTAA ACAAACTAGC GGGCTGACCT GACATCCAGG AACTTGGGAA
  AAATACCTAG GGCTTAGGAG CAGCCGAGCG ACTGTCTCAT CCATGCCTTG AGGACAGGCC
  Y
  AAGCCAATGT CGCAGGCTAC CACAGTTCGC CCACCTCCCC GCTCCCGGTC CGTCCCGCTC
  ACCAGGACCC CGAGCTGCTC CCGCGCCGGC TTCGAGTGGA CCTGAGCCCG CGGCACCATG
  AGCCGCCGGG CCGAGCCGGT CAGGCTCCTC AGCAGCAGTG GCGTCAGGAC AGACATGACG
  GCGCGGAACG ACCACGGACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50592952	NES13646659	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36880732					SNP	T	T	T	T	C	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50592952	NES13646659	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:7194701 () rs orientation: forward

Symbol	Name	Function Class
Cox8a	cytochrome c oxidase subunit 8A	within coordinates
Cpgi10550	CpG island 10550	within coordinates
Gm59070	predicted gene, 59070	within coordinates
Rr405837	regulatory region 405837	128 bp upstream
Rr543611	regulatory region 543611	270 bp proximal
Rr543612	regulatory region 543612	349 bp proximal
Rr543613	regulatory region 543613	635 bp proximal
Rr543614	regulatory region 543614	1863 bp proximal
Rr543615	regulatory region 543615	1996 bp proximal
Tssr154738	transcription start site region 154738	525 bp upstream
Tssr157942	transcription start site region 157942	1943 bp upstream
Tssr157943	transcription start site region 157943	187 bp downstream
Tssr157944	transcription start site region 157944	193 bp downstream
Tssr157945	transcription start site region 157945	213 bp downstream