rs3688173 SNP Detail

Summary

• ID
  rs3688173
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101127238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCAATAT GGGTCTACTC
  CCACTGATGT CTTAGTATAA AACCCTAAGA TAACCAAATT CAGGCCAAGG GCTGTAAGTG
  AAGCAAGATG CCCAGCATGT GTGGAAATAC TTTATTATTT CCACCCAGGC TTATGTTCTG
  TGGGTGCTCC CTAGAACTGA CAGTGCCCTC ACGCCCAAAG AAGTCTCTTA AAAACACCCC
  W
  GCCCTCAGGT TTTGTGTTTT CACTTTTGAA AGATATAAGG CACAAGTCTT GATGAAATTG
  TGAGTTTAGA CACAACTTTG TGATTTTTCT TAAAGATTTA TTTTAATTAT GTGTATATAT
  GTATGTGTTT ATGCACATCA GTGCAGTACC CACAAAGGCC AGAAGAGGGC ATCAGATCCC
  CACTGGAGCC ACAGGTTCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CZECHII/EiJ	DBA/2J
ss5064260	WI_WGS_3_101331179	WI	MOUSE	f	SNP			T	A	T
ss135545482	ENSMUSSNP348168	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CZECHII/EiJ	DBA/2J
rs3688173					SNP	A	T	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101127238 () rs orientation: forward

Symbol	Name	Function Class
Gm65590	predicted gene, 65590	within coordinates
Rr581978	regulatory region 581978	155 bp proximal