rs36881766 SNP Detail

Summary

• ID
  rs36881766
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61328507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTGGGAC TCTCCCCATC
  TAGAAACAGG ACCTACTTCT AACACTGCTC TTGGAGGCAA GCTCCTGAAC TCTGATCTTA
  CTGTGGGGTT TACCAGGATC TAGATCCAGC CAGGTCTCTT CCTTTCTGGA CAGTACAGAT
  CTTGGTGATC TAACCTTTCA CTCCCCTGAA CTGTGTTCCT TTCATAGCAG GTCTGTATAC
  K
  CACTAGCTTA CTCCATCCCT AGGACCTGTT AACTCCAGCA CCTGGAGGCA GAAGCAGGGA
  GACCAACAGT TTACAATCAT CCTTGGCTAC TTAGCGTATT TGAGGCCAGC CTGTGCTATA
  TAAGACCTTG TCATAAAATA CACAGACATG TACACTCTGT ATTTTAAATA AACGATAGTC
  ATTTAACAGC ATTCAGGGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50413752	NES13453170	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	G	G	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36881766					SNP	T	T	T	T	T	G	T	T	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50413752	NES13453170	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61328507 () rs orientation: forward

Symbol	Name	Function Class
Rr354846	regulatory region 354846	1308 bp distal
Rr356345	regulatory region 356345	425 bp distal
Slc26a2	solute carrier family 26 (sulfate transporter), member 2	1419 bp downstream
Tssr153542	transcription start site region 153542	763 bp downstream
Tssr153543	transcription start site region 153543	929 bp downstream
Tssr153544	transcription start site region 153544	1111 bp downstream