rs36881879 SNP Detail

Summary

• ID
  rs36881879
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70927824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATACCAAA TCAACCCTCC
  TCTGTCCCCC CCGCCCCGTC CCATCAACCC CCATCTTTCT CTCCCTTTCT CCCTCCCTCC
  CTAGACCCAT CCTTGTTTCT CCCCCTCCTT CTAAAACATA GATTAGTGCA TTGGTACAAA
  GTACTTTGTC AGTTTTTGCA CACCTGTCTT GTAGCCTGGC TCCTGCATCT TCCCATGCGC
  M
  TCTGTGGAGT TATGCAGGCA CATAGCTATT GCTTATGGCT TTTCACCCAA GTTATCTGAA
  AACAATATCT TGATTGATTC TGATACCTTT CTCACACATC CCCAGCTCGC AAACAGTTGC
  TTAATCATCT TTGTGTATAG TAGTGTCCCC CATTACTTAT ACAATAGATT ATGCTCCCAA
  ACTCAACAGT GTCTGAATCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51673422	NES14828337	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	A	A	A	A	C	C	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36881879					SNP	A	A	C	A	A	A	A	A	A	C	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51673422	NES14828337	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70927824 () rs orientation: forward

Symbol	Name	Function Class
Gm66475	predicted gene, 66475	535 bp upstream
Gm66915	predicted gene, 66915	within coordinates
Tssr61339	transcription start site region 61339	454 bp downstream