rs36882519 SNP Detail

Summary

• ID
  rs36882519
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:88530046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGCCAGA GAGGATAGGG
  TGAAGGCTAT TACTGTCCTG CCTTCAGACA GCACAAGCCA AGCTGTGCCC AGATCCCTAC
  GGAAACCAAC TCACTGTTCG ACCAGCTGCT GCTCTCTCGC CCTCTCTGGT CTTAGTTTTG
  GCAACAGCTC ATCAGGGCTG AGTATCCTCC AAGCAGACGC TAGCAGGACC CTGGAGTCCT
  Y
  GGAGTCTGCT GTTCCGTGCA AGATGCACCC ACCATTCCTC TATCCCACTG CGCCATCCTT
  ACACCCATGC CAGCAACACC ACGCAGGATT GGTACTCCTG CCAAAATAGC TATTAACCCA
  GTAGCCAATA ATAACACGTT ATCCTATCAA TTTGCTGCTG AAACGCTGTG TAATTGCCGA
  ACCGAAGTTT GCCATCTCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50598749	NES14052504	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36882519					SNP	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50598749	NES14052504	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:88530046 () rs orientation: forward

Symbol	Name	Function Class
Tssr82324	transcription start site region 82324	972 bp downstream
Tssr82325	transcription start site region 82325	993 bp downstream
Zfp423	zinc finger protein 423	within coordinates