rs36883009 SNP Detail

Summary

• ID
  rs36883009
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127583286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCAGTCGG TCCTCTGAAA
  GACCCTCACG AGGCTGTTGC CCCTGTCACC ACTCAGCACT AGGTGTTGGG CGAAGAAAGG
  TTGGTTAGCC GGAAGTGACA GGTGAGGAGG CTTCTGGACG GCTTGTGCGC AGGGTGGCAG
  CATCCCGAGG AAGGTTCCAA TCCTGTCTGG CTGGACTCTC ATCCGCTCCC CACGCCTCGG
  R
  TTGAGCAGAG AGTAGCCACT GCCTCCCAAG GCCCGAGATC AGGCGCACAT TCTTAGGGTC
  CCCAACGAGT CCTCCAACTG CCTGCTGGTC CACCACCCCA CAGCAGCTCT TAATCTGGAA
  CCGACCCAGT TCCTTTCTTC TCAAAGCCCA GCTCCCGGGT CACATGCCAT CTAGAGCTGC
  CTCTTGTTGG AGAAGGTGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51618326	NES14659897	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	G	A	G	G	G	G		G	G	G	A		G
ss135871341	ENSMUSSNP3955462	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
ss320956918	CHEV_3_127492555	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36883009					SNP	A	A	A	G	A	G	A	G	G	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51618326	NES14659897	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127583286 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	within coordinates
Cpgi13801	CpG island 13801	1001 bp proximal
Gm56817	predicted gene, 56817	within coordinates
Gm65064	predicted gene, 65064	1844 bp downstream
Gm65225	predicted gene, 65225	756 bp downstream
Rr584859	regulatory region 584859	1323 bp distal
Rr584860	regulatory region 584860	within coordinates
Rr584861	regulatory region 584861	161 bp proximal
Rr584862	regulatory region 584862	286 bp proximal
Rr584863	regulatory region 584863	610 bp proximal
Rr584864	regulatory region 584864	1178 bp proximal
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31594	transcription start site region 31594	435 bp downstream
Tssr31595	transcription start site region 31595	423 bp downstream
Tssr31596	transcription start site region 31596	390 bp downstream
Tssr31597	transcription start site region 31597	350 bp downstream
Tssr31598	transcription start site region 31598	327 bp downstream
Tssr31599	transcription start site region 31599	165 bp upstream
Tssr31600	transcription start site region 31600	229 bp upstream
Tssr31601	transcription start site region 31601	263 bp upstream
Tssr31602	transcription start site region 31602	304 bp upstream
Tssr31603	transcription start site region 31603	349 bp upstream
Tssr31604	transcription start site region 31604	466 bp upstream
Tssr31605	transcription start site region 31605	965 bp upstream
Tssr31606	transcription start site region 31606	1163 bp upstream
Tssr31607	transcription start site region 31607	1401 bp upstream
Tssr31608	transcription start site region 31608	1469 bp upstream
Tssr31609	transcription start site region 31609	1520 bp upstream
Tssr31610	transcription start site region 31610	1629 bp upstream
Tssr31611	transcription start site region 31611	1737 bp upstream
Tssr35598	transcription start site region 35598	105 bp downstream
Tssr35599	transcription start site region 35599	189 bp downstream
Tssr35600	transcription start site region 35600	206 bp downstream
Tssr35601	transcription start site region 35601	232 bp downstream
Tssr35602	transcription start site region 35602	564 bp downstream