rs36883575 SNP Detail

Summary

• ID
  rs36883575
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:21464343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAGGGCC TCAGCATTAG
  TCATGTTGAG AAAGAACCAC TGTTCTAGAG AAGTGTGCGT GCCTACACTA ACATTGTAAT
  CGTAATAGGA ACACCTAAAG CTCAGTGAGT TTCCCAAGAG TCTTCAGAAG TATACGTTTA
  GGTCTCACAG TTGCCAAGGG GTCAGGCATA ACACACCTTA CCTGTCCTGG ATAAAGGAAT
  Y
  GGGATCAATA TTGTCATGTC CAAAGTCACA GCATTAATTC TTTAAGAACT CTGGACTTCT
  GACCAGTAGT TCAAGGCCAT TTTTATTTTT AAAATACTCT TGACTCTCTC TGTGATCAGT
  ACTTCAGCAC CAAAAGACAG CTGTCTGATG GTTCTTATAC ACTAAATAAG AAAAGGGGAC
  AGTTAAATCT GTAACCCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ
ss50694715	NES13605146	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ
rs36883575					SNP	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50694715	NES13605146	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:21464343 () rs orientation: forward

Symbol	Name	Function Class
2010105D22Rik	RIKEN cDNA 2010105D22 gene	953 bp upstream
Gm59126	predicted gene, 59126	within coordinates
Rr361557	regulatory region 361557	1114 bp proximal