rs36883743 SNP Detail

Summary

• ID
  rs36883743
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12656423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCTAGTCC GCTGCGCGCG
  GCCTCTTCCT GTCTGTATCA GGGCGGCGCG TGGTCCACGC CGAGCGACTG AGAAGCCCAG
  TCTGCGCCCT CAGGTGAGGC TGCGGAGGGA CACGGAGTTC AGAAGAGGTG ACCATGAGTG
  TTCTAAGGCA CATCTGGGGG GCCGGAGGCC GAACCTGAAG CCTGGGCGTG ACCGCTTGGA
  Y
  CTCACCGTTT CTCTGCGAAA AAGGGTGCCT AGGGAAACTC GGCACGGGCC GAGTTAGTCT
  TCGCCTCTTG TTTGCACTGT TTTGACTTCA TACTTTGCAC ACACGGGACT CCAGGGAAAT
  CACTTGGGTC ATATACCATA AACATAAATC TAGGTTTGCT TAGTTTTGTG ATGACTCTTT
  TGCTCAGTAC ACGTTCTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51469124	NES13985229	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36883743					SNP	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51469124	NES13985229	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12656423 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18322	CpG island 18322	within coordinates
Gm57203	predicted gene, 57203	369 bp upstream
Rps5	ribosomal protein S5	within coordinates
Rr368230	regulatory region 368230	248 bp downstream
Rr642402	regulatory region 642402	406 bp distal
Rr642403	regulatory region 642403	196 bp distal
Rr642404	regulatory region 642404	99 bp distal
Tssr64485	transcription start site region 64485	176 bp downstream
Tssr64486	transcription start site region 64486	458 bp upstream
Tssr70626	transcription start site region 70626	400 bp upstream