rs36884177 SNP Detail

Summary

• ID
  rs36884177
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8517406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGAAGAATT TATTTGATCA TTAAGGTTCT GCTATTTGCC
  AGATGCTTGT AAGGACAATG ATTTATTTTT ACTCAATTAC TACAGAAAGC TCGGGCTGTT
  Y
  CCGGTGCAAC ACTGTCTTCA GTAGCCAATG ATTGGTAGAA AAAGTGCAGG CACATTTTTT
  TCTTTCTATT TTTGATTTTA GAAAACCCAA CATTTGATAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50811412	NES14194936	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36884177					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50811412	NES14194936	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8517406 () rs orientation: forward

Symbol	Name	Function Class
Gm24374	predicted gene, 24374	1292 bp upstream
Rr223734	regulatory region 223734	699 bp proximal
Rr229180	regulatory region 229180	206 bp distal
Rr384116	regulatory region 384116	1266 bp downstream