rs36884180 SNP Detail

Summary

• ID
  rs36884180
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:67101401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAGGAAG CGAAGAAAGA
  AATTTACCAG GGAAAGTTCT TGCTGTTTGG TTCAGCTGAG AAGAACTTTG TAAAGTTGTC
  TTCTTGGTGG TGGGGGGTGG GGGGCAAGAG GAAAGACAGC CTGATATAGA GCAATGGGGT
  TCAAGATAAA GGAAAAGTTG TAAGATGAGG TACAATTGCT TCAGGTTCAA TTAAAAACCA
  K
  GCTTTCTAGA GTAAGGGTTC AGCTCAGTGG GAAAGCAGGT GCCTCATATA TGCGGAGCCT
  TGGGTTTCGT GTCCAGCACC CTAATTTTTT AGTCAAAGAG AAAGTAAATT AATGCAAAGC
  ATCTCCTATA TGAATTAATG AAATATGATT GACATGAATA TGAATTTTTC CAGATTTTTT
  TTCAGTGGTT TCTGGTGAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50446900	NES13446939	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	T	G	T	G	G	G	T	G	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36884180					SNP	G	T	G	T	G	T	G	G	G	T	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50446900	NES13446939	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:67101401 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10165	CpG island 10165	621 bp proximal
Gm50164	predicted gene, 50164	within coordinates
Rr355164	regulatory region 355164	1801 bp distal
Rr356406	regulatory region 356406	637 bp distal
Rr393837	regulatory region 393837	1194 bp upstream