rs36884944 SNP Detail

Summary

• ID
  rs36884944
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142950571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGTGCCT TGGTGGCCTC
  TTTATTAAAA AGTGGTTGCA CAGGCCCCTT TGTTCCAGTA CCTGGAGATG AGACCCACAT
  GGTGAGGCCC TTTTTGTTCT CTGTCTGGAC GTCTCATTTT TCAGAGGTAC TGGGAGGTTG
  AAGGTTGGTG TATGTCCACA GCACTGTGCT GTCTTGAACT CAGTGCGCAT GACATCTTGG
  R
  CCAGGGCCTC TCCTTTGTGT GAGGGAAGCT AGCATGCTGG GAAACTCCGA CTCCTTTAGT
  CCACCCACTT TAGTTGTAGT TTTTGTCTTG TAGCCCATCT GGCTTCCAAC TCTCCATCCT
  CCTGCCTCAG TCTCCAGGGT GCGGCGATGA CAGGCATAGG TCACCACAGG CTTCTGGCCT
  CCACTTGATG GTTGCCGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51533811	NES14872370	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs36884944					SNP	G	G	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533811	NES14872370	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142950571 () rs orientation: forward

Symbol	Name	Function Class
Fscn1	fascin actin-bundling protein 1	within coordinates
Gm72694	predicted gene, 72694	369 bp upstream
Rr378736	regulatory region 378736	within coordinates
Rr624076	regulatory region 624076	within coordinates
Tssr49618	transcription start site region 49618	1127 bp downstream