rs36885049 SNP Detail

Summary

• ID
  rs36885049
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58662386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCGAGTGG AGAGTGTGAA
  CTGCATCTGT GTGGACTGGA AAGGCGGTTC CCGAACGACA TATACCCAGG CTACCCAGAA
  CGTCCGGGTC GTGGGGGCAG AAGTGGCATT GTTGGTTAAC GTTCTGCAGG TAACTGACTC
  TGGGTTATGT AAAATCCCTT AAGACACTGC TGTCTGGATT CTCCTTCCAT AACAAAATCT
  S
  TAGGTGTAAT CATTGATAAG GACAAATTTA AATAAGAAGA CATTACCCCT TTTGCTTAAA
  GATGAATCCC ACCCCAATCT TGATTCAGGC TTCACCAACA ACTAGTTTTG AATGTTAATT
  AAATGAACTT AAACAACTAG GTAGGTAATT TCACTTGAAT TCCGCCTGTG TTTTTTTTTC
  AACCATTTTT ATTTATTTAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ
ss50904027	NES13492709	PERLEGEN	MM_PANEL2	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ
rs36885049					SNP	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50904027	NES13492709	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58662386 () rs orientation: forward

Symbol	Name	Function Class
Pnlip	pancreatic lipase	within coordinates
Rr361109	regulatory region 361109	615 bp proximal
Tssr5571	transcription start site region 5571	827 bp downstream
Tssr157266	transcription start site region 157266	869 bp downstream
Tssr157267	transcription start site region 157267	850 bp downstream
Tssr157268	transcription start site region 157268	796 bp downstream
Tssr157269	transcription start site region 157269	203 bp downstream
Tssr157270	transcription start site region 157270	129 bp downstream
Tssr157271	transcription start site region 157271	1102 bp upstream
Tssr157272	transcription start site region 157272	1113 bp upstream
Tssr159959	transcription start site region 159959	817 bp upstream
Tssr159960	transcription start site region 159960	769 bp upstream
Tssr159961	transcription start site region 159961	1194 bp downstream