rs3688537 SNP Detail

Summary

• ID
  rs3688537
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:36392728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGG TTGTTGCCAA AGGCCCATGC
  Y
  ATCACCAAAG TCTCCCAGAG TCCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss5064625	WI_WGS_7_27208366	WI	MOUSE	f	SNP	C					T
ss48182509	NES11812122	PERLEGEN	MM_PANEL2	f	SNP			C	C	T		T		C	T		C	C		C
ss148848812	ENSMUSSNP3650371	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					T
ss322166695	CHEV_7_37478322	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs3688537					SNP	C	T	C	C	T	T	T	T	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48182509	NES11812122	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:36392728 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18883	CpG island 18883	995 bp proximal
Cpgi18884	CpG island 18884	1874 bp proximal
Gm36722	predicted gene, 36722	within coordinates
Rr645552	regulatory region 645552	451 bp distal
Rr645553	regulatory region 645553	within coordinates
Rr645554	regulatory region 645554	887 bp proximal