rs36885638 SNP Detail

Summary

• ID
  rs36885638
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:88863206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATAGGAGA GTCCAGCGCT
  GGATTTGGAT CCTGACCAGT ATTGGGCCCC GAACAGAAAA CTACTCAAAG GTCTACATCT
  TTTTAAGCCG TCATTCTTTG TTTCCCATTA TTACTTGACG AAAATCTCCT TCGTCAGGCC
  GCATAAACCT TTATGTTCTT GATTTTGGCA AAGCTGGCCC TTGAACTGCT GGGAATTCCA
  S
  CATGGGTTCC CATGGCAGCC CCAAGGATTG GCAGGAATGG TCCCACTGCA GCCTTTATTC
  CTGCTCAGTA GGCAGAGAAA AGGGACATGA ATGTGCTTCA TTTGCCTGGA GACATTGGCA
  CCCTGGCAAT TACAGCAACA ATTTCTTTGT GCACATTGCA AAAAAGGCTC AGCCCAGAGT
  ACTTGGGAAA CAAAACAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51740325	NES14559990	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36885638					SNP	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51740325	NES14559990	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:88863206 () rs orientation: forward

Symbol	Name	Function Class
Gm8702	predicted gene 8702	1018 bp downstream
Mlc1	megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	14 bp upstream
Tssr135826	transcription start site region 135826	1144 bp upstream
Tssr135827	transcription start site region 135827	1054 bp upstream
Tssr135828	transcription start site region 135828	439 bp upstream
Tssr135829	transcription start site region 135829	406 bp upstream
Tssr135830	transcription start site region 135830	194 bp upstream
Tssr135831	transcription start site region 135831	11 bp upstream
Tssr135832	transcription start site region 135832	1421 bp downstream