rs3688570 SNP Detail

Summary

• ID
  rs3688570
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54567747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTA AGTCCCTGTC AACATAGACC
  Y
  GATACATGGA CTTCAGCAAA CACTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5064658	WI_WGS_9_55191254	WI	MOUSE	f	SNP	T			C
ss46389895	mCV24161033	ABI	CRAMUS_MOUSE	f	SNP		T	C	C	T
ss136506899	ENSMUSSNP3560319	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		T
ss322965573	CHEV_9_54508270	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3688570					SNP	T	T	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54567747 () rs orientation: forward

Symbol	Name	Function Class
Acsbg1	acyl-CoA synthetase bubblegum family member 1	within coordinates
Rr206444	regulatory region 206444	853 bp proximal
Tssr89653	transcription start site region 89653	1203 bp downstream
Tssr89654	transcription start site region 89654	1381 bp downstream
Tssr89655	transcription start site region 89655	1421 bp downstream